1BD8

STRUCTURE OF CDK INHIBITOR P19INK4D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of human cyclin-dependent kinase inhibitor p19INK4d: comparison to known ankyrin-repeat-containing structures and implications for the dysfunction of tumor suppressor p16INK4a.

Baumgartner, R.Fernandez-Catalan, C.Winoto, A.Huber, R.Engh, R.A.Holak, T.A.

(1998) Structure 6: 1279-1290

  • DOI: 10.1016/s0969-2126(98)00128-2
  • Primary Citation of Related Structures:  
    1BD8

  • PubMed Abstract: 
  • The four members of the INK4 gene family (p16(INK4a), p15(INK4b), p18(INK4c) and p19(INK4d)) inhibit the closely related cyclin-dependent kinases CDK4 and CDK6 as part of the regulation of the G1-->S transition in the cell-division cycle. Loss of INK ...

    The four members of the INK4 gene family (p16(INK4a), p15(INK4b), p18(INK4c) and p19(INK4d)) inhibit the closely related cyclin-dependent kinases CDK4 and CDK6 as part of the regulation of the G1-->S transition in the cell-division cycle. Loss of INK4 gene product function, particularly that of p16(INK4a), is found in 10-60% of human tumors, suggesting that broadly applicable anticancer therapies might be based on restoration of p16(INK4a) CDK inhibitory function. Although much less frequent, defects of p19(INK4d) have also been associated with human cancer (osteosarcomas). The protein structures of some INK4 family members, determined by nuclear magnetic resonance (NMR) spectroscopy and X-ray techniques, have begun to clarify the functional role of p16(INK4a) and the dysfunction introduced by the mutations associated with human tumors.


    Related Citations: 
    • Crystal Structure of the Cdk4/6 Inhibitory Protein P18Ink4C Provides Insights Into Ankyrin-Like Repeat Structure/Function and Tumor-Derived P16Ink4 Mutations
      Venkataramani, R., Swaminathan, K., Marmorstein, R.
      (1998) Nat Struct Biol 5: 74

    Organizational Affiliation

    Max Planck Institute for Biochemistry D-82152, Martinsried, Federal Republic of Germany.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
P19INK4D CDK4/6 INHIBITORA156Homo sapiensMutation(s): 0 
Gene Names: CDKN2D
Find proteins for P55273 (Homo sapiens)
Explore P55273 
Go to UniProtKB:  P55273
NIH Common Fund Data Resources
PHAROS  P55273
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.190 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 28.47α = 90
b = 54.56β = 90.16
c = 45.59γ = 90
Software Package:
Software NamePurpose
CCP4model building
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CCP4phasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-10-14
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance