1B65

Structure of l-aminopeptidase d-ala-esterase/amidase from ochrobactrum anthropi, a prototype for the serine aminopeptidases, reveals a new variant among the ntn hydrolase fold


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.169 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

A new variant of the Ntn hydrolase fold revealed by the crystal structure of L-aminopeptidase D-ala-esterase/amidase from Ochrobactrum anthropi.

Bompard-Gilles, C.Villeret, V.Davies, G.J.Fanuel, L.Joris, B.Frere, J.M.Van Beeumen, J.

(2000) Structure Fold.Des. 8: 153-162


  • PubMed Abstract: 
  • The L-aminopeptidase D-Ala-esterase/amidase from Ochrobactrum anthropi (DmpA) releases the N-terminal L and/or D-Ala residues from peptide substrates. This is the only known enzyme to liberate N-terminal amino acids with both D and L stereospecificit ...

    The L-aminopeptidase D-Ala-esterase/amidase from Ochrobactrum anthropi (DmpA) releases the N-terminal L and/or D-Ala residues from peptide substrates. This is the only known enzyme to liberate N-terminal amino acids with both D and L stereospecificity. The DmpA active form is an alphabeta heterodimer, which results from a putative autocatalytic cleavage of an inactive precursor polypeptide.


    Related Citations: 
    • Crystallization and preliminary X-ray analysis of a new L-aminopeptidase-D-amidase/D-esterase activated by a Gly-Ser peptide bond hydrolysis.
      Bompard-Gilles, C.,Villeret, V.,Fanuel, L.,Joris, B.,Frere, J.M.,Van Beeumen, J.
      (1999) Acta Crystallogr.,Sect.D 55: 699
    • Structure of L-Aminopeptidase D-Ala-Esterase/ Amidase from Ochrobactrum Anthropi, a Prototype for the Serine Aminopeptidases,Reveals a New Variant Among the Ntn Hydrolase Fold
      Bompard-Gilles, C.,Villeret, V.,Davies, G.J.,Fanuel, L.,Joris, B.,Frere, J.M.,Van Beeumen, J.
      () TO BE PUBLISHED --: --


    Organizational Affiliation

    Laboratorium voor Eiwitbiochemie en Eiwitengineering, Rijksuniversiteit-Gent, Gent, B-9000, Belgium.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (AMINOPEPTIDASE)
A, B, C, D, E, F
375Ochrobactrum anthropiMutation(s): 0 
Gene Names: dmpA
EC: 3.4.11.19
Find proteins for Q59632 (Ochrobactrum anthropi)
Go to UniProtKB:  Q59632
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.169 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 156.970α = 90.00
b = 96.220β = 90.00
c = 154.410γ = 90.00
Software Package:
Software NamePurpose
CCP4model building
CCP4phasing
SCALEPACKdata scaling
REFMACrefinement
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1999-07-23
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance