1AYA

CRYSTAL STRUCTURES OF PEPTIDE COMPLEXES OF THE AMINO-TERMINAL SH2 DOMAIN OF THE SYP TYROSINE PHOSPHATASE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Work: 0.180 
  • R-Value Observed: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structures of peptide complexes of the amino-terminal SH2 domain of the Syp tyrosine phosphatase.

Lee, C.H.Kominos, D.Jacques, S.Margolis, B.Schlessinger, J.Shoelson, S.E.Kuriyan, J.

(1994) Structure 2: 423-438

  • DOI: 10.1016/s0969-2126(00)00044-7
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Src homology 2 (SH2) domains bind to phosphotyrosine residues in a sequence-specific manner, and thereby couple tyrosine phosphorylation to changes in the localization or catalytic activity of signal transducing molecules. Current understanding of SH ...

    Src homology 2 (SH2) domains bind to phosphotyrosine residues in a sequence-specific manner, and thereby couple tyrosine phosphorylation to changes in the localization or catalytic activity of signal transducing molecules. Current understanding of SH2 specificity is based on the structures of SH2-peptide complexes of the closely-related Src and Lck tyrosine kinases. The tyrosine phosphatase Syp contains two SH2 domains that are relatively divergent from those of the tyrosine kinases, with distinct target specificities, and is thus well suited for structural studies aimed at extending our understanding of SH2 specificity.


    Related Citations: 
    • Binding of a High Affinity Phosphotyrosyl Peptide to the Src Sh2 Domain: Crystal Structures of the Complexed and Peptide-Free Forms
      Waksman, G., Shoelson, S.E., Pant, N., Cowburn, D., Kuriyan, J.
      (1993) Cell 72: 779
    • Structures of Sh2 and SH3 Domains
      Kuriyan, J., Cowburn, D.
      (1993) Curr Opin Struct Biol 3: 828
    • Crystal Structure of the Phosphotyrosine Recognition Domain Sh2 of V-Src Complexed with Tyrosine-Phosphorylated Peptides
      Waksman, G., Kominos, D., Robertson, S.R., Pant, N., Baltimore, D., Birge, R.B., Cowburn, D., Hanafusa, H., Mayer, B.J., Overduin, M., Resh, M.D., Rios, C.B., Silverman, L., Kuriyan, J.
      (1992) Nature 358: 646

    Organizational Affiliation

    Laboratory of Molecular Biophysics, Rockefeller University, New York, NY 10021.



Macromolecules
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
PEPTIDE PDGFR-1009P, Q11Mus musculusMutation(s): 0 
Gene Names: PdgfrbPdgfrPdgfr1
EC: 2.7.10.1
Find proteins for P05622 (Mus musculus)
Explore P05622 
Go to UniProtKB:  P05622
NIH Common Fund Data Resources
IMPC  MGI:97531
Protein Feature View
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  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PROTEIN-TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN)A, B101Mus musculusMutation(s): 0 
Gene Names: Ptpn11
EC: 3.1.3.48
Find proteins for P35235 (Mus musculus)
Explore P35235 
Go to UniProtKB:  P35235
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
PTR
Query on PTR
P,QL-PEPTIDE LINKINGC9 H12 N O6 PTYR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Work: 0.180 
  • R-Value Observed: 0.180 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 33.8α = 90
b = 52.7β = 101.1
c = 56.4γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1994-08-31
    Type: Initial release
  • Version 1.1: 2008-03-03
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance