1AU1 | pdb_00001au1

HUMAN INTERFERON-BETA CRYSTAL STRUCTURE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.283 (Depositor) 
  • R-Value Work: 
    0.223 (Depositor) 
  • R-Value Observed: 
    0.223 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1AU1

This is version 3.1 of the entry. See complete history

Literature

The crystal structure of human interferon beta at 2.2-A resolution.

Karpusas, M.Nolte, M.Benton, C.B.Meier, W.Lipscomb, W.N.Goelz, S.

(1997) Proc Natl Acad Sci U S A 94: 11813-11818

  • DOI: https://doi.org/10.1073/pnas.94.22.11813
  • Primary Citation Related Structures: 
    1AU1

  • PubMed Abstract: 

    Type I interferons (IFNs) are helical cytokines that have diverse biological activities despite the fact that they appear to interact with the same receptor system. To achieve a better understanding of the structural basis for the different activities of alpha and beta IFNs, we have determined the crystal structure of glycosylated human IFN-beta at 2.2-A resolution by molecular replacement. The molecule adopts a fold similar to that of the previously determined structures of murine IFN-beta and human IFN-alpha2b but displays several distinct structural features. Like human IFN-alpha2b, human IFN-beta contains a zinc-binding site at the interface of the two molecules in the asymmetric unit, raising the question of functional relevance for IFN-beta dimers. However, unlike the human IFN-alpha2b dimer, in which homologous surfaces form the interface, human IFN-beta dimerizes with contact surfaces from opposite sides of the molecule. The relevance of the structure to the effects of point mutations in IFN-beta at specific exposed residues is discussed. A potential role of ligand-ligand interactions in the conformational assembly of IFN receptor components is discussed.


  • Organizational Affiliation
    • Biogen, Inc., 12 Cambridge Center, Cambridge, MA 02142, USA. Michael_Karpusas@biogen.com

Macromolecule Content 

  • Total Structure Weight: 41.64 kDa 
  • Atom Count: 2,976 
  • Modeled Residue Count: 329 
  • Deposited Residue Count: 332 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
INTERFERON-BETA
A, B
166Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P01574 (Homo sapiens)
Explore P01574 
Go to UniProtKB:  P01574
PHAROS:  P01574
GTEx:  ENSG00000171855 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01574
Glycosylation
Glycosylation Sites: 1Go to GlyGen: P01574-1
Sequence Annotations
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Reference Sequence

Oligosaccharides

Help  
Entity ID: 2
MoleculeChains Length2D Diagram GlycosylationD Interactions
beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-[alpha-D-quinovopyranose-(1-6)]beta-D-glucopyranose
C
7N-Glycosylation
Glycosylation Resources
GlyTouCan: G32128RU
GlyCosmos: G32128RU
GlyGen: G32128RU
Entity ID: 3
MoleculeChains Length2D Diagram GlycosylationD Interactions
alpha-D-quinovopyranose-(1-6)-beta-D-glucopyranose
D
2N-Glycosylation
Glycosylation Resources
GlyTouCan: G79016OO
GlyCosmos: G79016OO
GlyGen: G79016OO

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN

Query on ZN



Download:Ideal Coordinates CCD File
E [auth B]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.283 (Depositor) 
  • R-Value Work:  0.223 (Depositor) 
  • R-Value Observed: 0.223 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.3α = 90
b = 65.9β = 90
c = 121.5γ = 90
Software Package:
Software NamePurpose
bioteXdata collection
AMoREphasing
X-PLORmodel building
X-PLORrefinement
bioteXdata reduction
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1998-06-17
    Type: Initial release
  • Version 1.1: 2008-03-03
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 2.0: 2017-10-25
    Changes: Advisory, Atomic model, Refinement description, Structure summary
  • Version 3.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary
  • Version 3.1: 2024-11-20
    Changes: Data collection, Database references, Structure summary