Biological Assembly 1  

 3D View: Structure | 1D-3D View | Electron Density | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 20.41 kDa 
• Atom Count: 1614 
• Modelled Residue Count: 185 
• Deposited Residue Count: 185 
• Unique protein chains: 1

153L

THE REFINED STRUCTURES OF GOOSE LYSOZYME AND ITS COMPLEX WITH A BOUND TRISACCHARIDE SHOW THAT THE "GOOSE-TYPE LYSOZYMES LACK A CATALYTIC ASPARTATE

• PDB DOI: 10.2210/pdb153L/pdb

• Classification: HYDROLASE(O-GLYCOSYL)
• Organism(s): Anser anser anser
• Mutation(s): No 


• Deposited: 1994-05-05 Released: 1995-01-26 
• Deposition Author(s): Weaver, L.H., Gruetter, M.G., Matthews, B.W.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Observed: 0.150 

Literature

The refined structures of goose lysozyme and its complex with a bound trisaccharide show that the "goose-type" lysozymes lack a catalytic aspartate residue.

Weaver, L.H., Grutter, M.G., Matthews, B.W.

(1995) J Mol Biol 245: 54-68

• PubMed: 7823320 
• DOI: 10.1016/s0022-2836(95)80038-7
• Primary Citation of Related Structures:  
  153L, 154L


• PubMed Abstract: 
  

The structure of goose egg-white lysozyme (GEWL) has been refined to an R-value of 15.9% at 1.6 A resolution. Details of the structure determination, the refinement and the structure itself are presented. The structure of a complex of the enzyme with the trisaccharide of N-acetyl glucosamine has also been determined and refined at 1.6 A resolution. The trisaccharide occupies sites analogous to the B, C and D subsites of chicken (HEWL) and phage T4 (T4L) lysozymes. All three lysozymes (GEWL, HEWL and T4L) display the same characteristic set of bridging hydrogen bonds between backbone atoms of the protein and the 2-acetamido group of the saccharide in subsite C. Glu73 of GEWL is seen to correspond closely to Glu35 of HEWL (and to Glu11 of T4L) and supports the established view that this group is critically involved in the catalytic mechanism. There is, however, no obvious residue in goose lysozyme that is a counterpart of Asp52 of chicken lysozyme (or of Asp20 in T4L), suggesting that a second acidic residue is not essential for the catalytic activity of goose lysozyme, and may not be required for the activity of other lysozymes.

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Related Citations: 

• The Structure of Bacteriophage T4 Lysozyme Refined at 1.7 Angstroms Resolution
  Weaver, L.H., Matthews, B.W.
  (1987) J Mol Biol 193: 189

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Organizational Affiliation: 

Institute of Molecular Biology, Howard Hughes Medical Institute, Eugene, OR.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GOOSE LYSOZYME	A	185	Anser anser anser	Mutation(s): 0  EC: 3.2.1.17
UniProt
Find proteins for P00718 (Anser anser anser) Explore P00718  Go to UniProtKB:  P00718

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Observed: 0.150 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.3	α = 90
b = 65.7	β = 116
c = 45.2	γ = 90

Software Package:

Software Name	Purpose
TNT	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1994-05-05 
• Released Date: 1995-01-26 
Deposition Author(s): Weaver, L.H., Gruetter, M.G., Matthews, B.W.

Revision History  

• Version 1.0: 1995-01-26
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance