6OGN

Crystal structure of mouse protein arginine methyltransferase 7 in complex with SGC8158 chemical probe


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.211 

wwPDB Validation   3D Report Full Report

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This is version 1.2 of the entry. See complete history


Literature

Pharmacological inhibition of PRMT7 links arginine monomethylation to the cellular stress response.

Szewczyk, M.M.Ishikawa, Y.Organ, S.Sakai, N.Li, F.Halabelian, L.Ackloo, S.Couzens, A.L.Eram, M.Dilworth, D.Fukushi, H.Harding, R.Dela Sena, C.C.Sugo, T.Hayashi, K.McLeod, D.Zepeda, C.Aman, A.Sanchez-Osuna, M.Bonneil, E.Takagi, S.Al-Awar, R.Tyers, M.Richard, S.Takizawa, M.Gingras, A.C.Arrowsmith, C.H.Vedadi, M.Brown, P.J.Nara, H.Barsyte-Lovejoy, D.

(2020) Nat Commun 11: 2396-2396

  • DOI: https://doi.org/10.1038/s41467-020-16271-z
  • Primary Citation of Related Structures:  
    6OGN

  • PubMed Abstract: 

    Protein arginine methyltransferases (PRMTs) regulate diverse biological processes and are increasingly being recognized for their potential as drug targets. Here we report the discovery of a potent, selective, and cell-active chemical probe for PRMT7. SGC3027 is a cell permeable prodrug, which in cells is converted to SGC8158, a potent, SAM-competitive PRMT7 inhibitor. Inhibition or knockout of cellular PRMT7 results in drastically reduced levels of arginine monomethylated HSP70 family stress-associated proteins. Structural and biochemical analyses reveal that PRMT7-driven in vitro methylation of HSP70 at R469 requires an ATP-bound, open conformation of HSP70. In cells, SGC3027 inhibits methylation of both constitutive and inducible forms of HSP70, and leads to decreased tolerance for perturbations of proteostasis including heat shock and proteasome inhibitors. These results demonstrate a role for PRMT7 and arginine methylation in stress response.


  • Organizational Affiliation

    Structural Genomics Consortium, University of Toronto, Toronto, ON, M5G 1L7, Canada.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein arginine N-methyltransferase 7692Mus musculusMutation(s): 0 
Gene Names: Prmt7Kiaa1933
EC: 2.1.1.321
UniProt & NIH Common Fund Data Resources
Find proteins for Q922X9 (Mus musculus)
Explore Q922X9 
Go to UniProtKB:  Q922X9
IMPC:  MGI:2384879
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ922X9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.211 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.813α = 90
b = 97.813β = 90
c = 169.539γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-3000data reduction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-04-17
    Type: Initial release
  • Version 1.1: 2022-02-23
    Changes: Database references
  • Version 1.2: 2023-10-11
    Changes: Data collection, Refinement description