6OGN

Crystal structure of mouse protein arginine methyltransferase 7 in complex with SGC8158 chemical probe


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.211 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of mouse protein arginine methyltransferase 7 in complex with SGC8158 chemical probe

Halabelian, L.Dong, A.Zeng, H.Li, Y.Hutchinson, A.Seitova, A.Bountra, C.Edwards, A.M.Arrowsmith, C.H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Protein arginine N-methyltransferase 7A692Mus musculusMutation(s): 0 
Gene Names: Prmt7Kiaa1933
EC: 2.1.1.321
UniProt & NIH Common Fund Data Resources
Find proteins for Q922X9 (Mus musculus)
Explore Q922X9 
Go to UniProtKB:  Q922X9
IMPC:  MGI:2384879
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MJ7 (Subject of Investigation/LOI)
Query on MJ7

Download Ideal Coordinates CCD File 
C [auth A]5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-3-yl)methyl]amino}butyl)-5'-thioadenosine
C27 H31 Cl N6 O3 S
UDFJXRJYAZANFF-VBHAUSMQSA-N
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
B [auth A]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

Download Ideal Coordinates CCD File 
D [auth A], E [auth A], F [auth A]UNKNOWN ATOM OR ION
X
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.211 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.813α = 90
b = 97.813β = 90
c = 169.539γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-3000data reduction

Structure Validation

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Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-04-17
    Type: Initial release