Design, synthesis and biological activity evaluation of plinabulin derivatives based on co-crystal structure
Fu, Z.Y., Li, W.B.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tubulin alpha chain | 450 | Sus barbatus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A0R4I993 (Sus barbatus) Explore A0A0R4I993  Go to UniProtKB:  A0A0R4I993 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0R4I993 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tubulin beta chain | 445 | Sus barbatus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A0R4I995 (Sus barbatus) Explore A0A0R4I995  Go to UniProtKB:  A0A0R4I995 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0R4I995 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Stathmin-4 | 143 | Rattus norvegicus | Mutation(s): 0  Gene Names: Stmn4 | ||
UniProt | |||||
Find proteins for P63043 (Rattus norvegicus) Explore P63043  Go to UniProtKB:  P63043 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P63043 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tubulin tyrosine ligase | 384 | Gallus gallus | Mutation(s): 0  Gene Names: TTL | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 7 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GTP Query on GTP | G [auth A], P [auth C], S [auth D] | GUANOSINE-5'-TRIPHOSPHATE C10 H16 N5 O14 P3 XKMLYUALXHKNFT-UUOKFMHZSA-N | |||
ACP Query on ACP | U [auth F] | PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER C11 H18 N5 O12 P3 UFZTZBNSLXELAL-IOSLPCCCSA-N | |||
GDP Query on GDP | J [auth B] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N | |||
8WR Query on 8WR | O [auth B] | (3Z,6Z)-3-[(4-tert-butyl-1H-imidazol-5-yl)methylidene]-6-[[3-(phenylcarbonyl)phenyl]methylidene]piperazine-2,5-dione C26 H24 N4 O3 UOGLYILRMWEYRW-NMGXZBPKSA-N | |||
MES Query on MES | L [auth B], N [auth B] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N | |||
CA Query on CA | I [auth A], M [auth B], R [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
MG Query on MG | H [auth A], K [auth B], Q [auth C], T [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 105.461 | α = 90 |
b = 157.73 | β = 90 |
c = 182.147 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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16-5-1-61-jch | China | -- |