5D1J

CRYSTAL STRUCTURE OF CYCLIN-DEPENDENT KINASE 2 (CDK2-WT) COMPLEX WITH N-[5-[[[5-(1,1-DIMETHYLETHYL)-2-OXAZOLYL] METHYL]THIO]-2-THIAZOLYL]-4-PIPERIDINECARBOXAMIDE (BMS-387032)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 5D1J

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 34357.02

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
56H
Query on 56H

A N-(5-{[(5-tert-butyl-1,3-oxazol-2-yl)methyl]sulfanyl}- 1,3-thiazol-2-yl)piperidine-4-carboxamide
C17 H24 N4 O2 S2
OUSFTKFNBAZUKL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
56H IC50: 38 - 46 nM (100) BindingDB
Kd: 69 - 69000 nM (100) BindingDB
Ki: 38 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.201
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.72 α = 90.00
b = 72.78 β = 90.00
c = 72.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-04
  • Released Date: 2015-08-12
  • Deposition author(s): Sack, J.S.

Revision History

  • Version 1_0: 2015-08-12

    Type: Initial release