5C7Z

AP2 Mu2 adaptin C-terminal domain complexed with integrin alpha-4 peptide

PDB DOI: https://doi.org/10.2210/pdb5C7Z/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Rattus norvegicus, Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-06-25 Released: 2016-07-06
Deposition Author(s): Owen, D.J., Evans, P.R., Wilson, T.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.77 Å
R-Value Free: 0.224
R-Value Work: 0.174
R-Value Observed: 0.177

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

AP2 Mu2 adaptin C-terminal domain complexed with integrin alpha-4 peptide

Owen, D.J., Evans, P.R., Wilson, T.A.

To be published.

Macromolecule Content

Total Structure Weight: 34 kDa
Atom Count: 2,175
Modelled Residue Count: 264
Deposited Residue Count: 296
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AP-2 complex subunit mu	A	288	Rattus norvegicus	Mutation(s): 0 Gene Names: Ap2m1
UniProt
Find proteins for P84092 (Rattus norvegicus) Explore P84092 Go to UniProtKB: P84092
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P84092
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Integrin alpha-4	B	8	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P13612 (Homo sapiens) Explore P13612 Go to UniProtKB: P13612
PHAROS: P13612 GTEx: ENSG00000115232
Entity Groups
UniProt Group	P13612
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.77 Å
R-Value Free: 0.224
R-Value Work: 0.174
R-Value Observed: 0.177
Space Group: P 6₄

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 125.65	α = 90
b = 125.65	β = 90
c = 74.41	γ = 120

Software Package:

Software Name	Purpose
PDB_EXTRACT	data extraction
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing
REFMAC	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2016-07-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-07-06
Type: Initial release
Version 1.1: 2024-01-10
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.