5C7Z | pdb_00005c7z

AP2 Mu2 adaptin C-terminal domain complexed with integrin alpha-4 peptide

PDB DOI: https://doi.org/10.2210/pdb5C7Z/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Rattus norvegicus, Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-06-25 Released: 2016-07-06
Deposition Author(s): Owen, D.J., Evans, P.R., Wilson, T.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.77 Å
R-Value Free:
0.224 (Depositor), 0.228 (DCC)
R-Value Work:
0.174 (Depositor), 0.182 (DCC)
R-Value Observed:
0.177 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

AP2 Mu2 adaptin C-terminal domain complexed with integrin alpha-4 peptide

Owen, D.J., Evans, P.R., Wilson, T.A.

To be published.

Macromolecule Content

Total Structure Weight: 34 kDa
Atom Count: 2,175
Modeled Residue Count: 264
Deposited Residue Count: 296
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AP-2 complex subunit mu	A	288	Rattus norvegicus	Mutation(s): 0 Gene Names: Ap2m1
UniProt
Find proteins for P84092 (Rattus norvegicus) Explore P84092 Go to UniProtKB: P84092
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P84092
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Integrin alpha-4	B	8	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P13612 (Homo sapiens) Explore P13612 Go to UniProtKB: P13612
PHAROS: P13612 GTEx: ENSG00000115232
Entity Groups
UniProt Group	P13612
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.77 Å
R-Value Free: 0.224 (Depositor), 0.228 (DCC)
R-Value Work: 0.174 (Depositor), 0.182 (DCC)
R-Value Observed: 0.177 (Depositor)

Space Group: P 6₄

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 125.65	α = 90
b = 125.65	β = 90
c = 74.41	γ = 120

Software Package:

Software Name	Purpose
PDB_EXTRACT	data extraction
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing
REFMAC	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-07-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-07-06
Type: Initial release
Version 1.1: 2024-01-10
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.