5T0S

Synaptotagmin 1 C2B domain, cadmium-bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.159

Literature

Macromolecules
Sequence Display for 5T0S

Classification: METAL BINDING PROTEIN

Total Structure Weight: 17359.47

Macromolecule Entities
Molecule Chains Length Organism Details
Synaptotagmin-1 A 151 Mus musculus Fragment: C2B domain residues 271-421
Gene Name(s): Syt1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.159
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 40.99 α = 90.00
b = 41.95 β = 90.00
c = 80.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-16
  • Released Date: 2017-06-14
  • Deposition author(s): Taylor, A.B., Hart, P.J., Igumenova, T.I.

Revision History

  • 2017-07-05
    Type: Database references