5NKC

Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 2h


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 5NKC

Classification: TRANSFERASE

Total Structure Weight: 35009.86

Macromolecule Entities
Molecule Chains Length Organism Details
Ephrin type-A receptor 2 A 306 Homo sapiens EC#: 2.7.10.1 IUBMB
Gene Name(s): EPHA2 Gene View ECK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
90T
Query on 90T

A (3~{S})-1-[3-[[5-[(2-chloranyl-6-methyl-phenyl)carbamoyl]- 1,3-thiazol-2-yl]amino]phenyl]carbonylpyrrolidine- 3-carboxylic acid
C23 H21 Cl N4 O4 S
RQFQWAHQNYFCJN-HNNXBMFYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.160
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 32.78 α = 90.00
b = 107.80 β = 109.02
c = 40.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-03-31
  • Released Date: 2017-06-07
  • Deposition author(s): KUDLINZKI, D., LINHARD, V.L., WITT, K., GANDE, S.L., SAXENA, K., HEINZLMEIR, S., MEDARD, G., KUESTER, B., SCHWALBE, H.

Revision History

  • Version 1_0: 2017-06-07

    Type: Initial release

  • Version 1_1: 2017-06-28

    Type: Database references