5NK3

Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 1l


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 5NK3

Classification: TRANSFERASE

Total Structure Weight: 34980.87

Macromolecule Entities
Molecule Chains Length Organism Details
Ephrin type-A receptor 2 A 306 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: UNP residues 596-900
Gene Name(s): EPHA2 Gene View ECK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
92Q
Query on 92Q

A ~{N}-(2-chloranyl-6-methyl-phenyl)-2-[[3- [[(3~{S})-pyrrolidin-3-yl]carbamoyl]phenyl]amino]- 1,3-thiazole-5-carboxamide
C22 H22 Cl N5 O2 S
NFJBJEVYNAEEOP-INIZCTEOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.193
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 32.80 α = 75.90
b = 40.92 β = 80.88
c = 52.01 γ = 70.53

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-03-31
  • Released Date: 2017-06-07
  • Deposition author(s): KUDLINZKI, D., LINHARD, V.L., WITT, K., GANDE, S.L., SAXENA, K., HEINZLMEIR, S., MEDARD, G., KUESTER, B., SCHWALBE, H.

Revision History

  • Version 1_0: 2017-06-07

    Type: Initial release

  • Version 1_1: 2017-06-28

    Type: Database references