5L6S

Crystal structure of E. coli ADP-glucose pyrophosphorylase (AGPase) in complex with a positive allosteric regulator beta-fructose-1,6-diphosphate (FBP) - AGPase*FBP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.04 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 5L6S

Classification: TRANSFERASE

Total Structure Weight: 785244.38

Macromolecule Entities
Molecule Chains Length Organism Details
Glucose-1-phosphate adenylyltransferase A, B, C..., D, E, F, G, H, I, J, K, L, M, N, O, PA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P 431 Escherichia coli EC#: 2.7.7.27 IUBMB
Gene Name(s): glgC b3430 JW3393
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FBP
Query on FBP

C, G, I, L BETA-FRUCTOSE-1,6-DIPHOSPHATE
FRUCTOSE-1,6-BISPHOSPHATE (Synonym)
C6 H14 O12 P2
RNBGYGVWRKECFJ-ARQDHWQXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D, E, F, G, H, I, J, K, L, P SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.04 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.234
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 161.16 α = 90.00
b = 148.90 β = 113.10
c = 177.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-31
  • Released Date: 2016-09-07
  • Deposition author(s): Cifuente, J.O., Albesa-Jove, D., Comino, N., Madariaga-Marcos, J., Agirre, J., Lopez-Fernandez, S., Garcia-Alija, M., Guerin, M.E.

Revision History

  • Version 1_0: 2016-09-07

    Type: Initial release

  • Version 1_1: 2016-09-14

    Type: Database references