Crystal Structure of Beta-Lactamase/D-Alanine Carboxypeptidase from Pseudomonas syringae
Kim, Y., Hatzos-Skintges, C., Endres, M., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-Lactamase/D-Alanine Carboxypeptidase | 366 | Pseudomonas syringae pv. tomato str. DC3000 | Mutation(s): 0  Gene Names: ampC, PSPTO_3594 EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for Q87Z37 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q87Z37  Go to UniProtKB:  Q87Z37 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q87Z37 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-Lactamase/D-Alanine Carboxypeptidase | 366 | Pseudomonas syringae pv. tomato str. DC3000 | Mutation(s): 0  Gene Names: ampC, PSPTO_3594 EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for Q87Z37 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q87Z37  Go to UniProtKB:  Q87Z37 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q87Z37 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-Lactamase/D-Alanine Carboxypeptidase | 366 | Pseudomonas syringae pv. tomato str. DC3000 | Mutation(s): 0  Gene Names: ampC, PSPTO_3594 EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for Q87Z37 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q87Z37  Go to UniProtKB:  Q87Z37 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q87Z37 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-Lactamase/D-Alanine Carboxypeptidase | 366 | Pseudomonas syringae pv. tomato str. DC3000 | Mutation(s): 0  Gene Names: ampC, PSPTO_3594 EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for Q87Z37 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q87Z37  Go to UniProtKB:  Q87Z37 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q87Z37 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | E [auth A] F [auth A] H [auth B] J [auth C] K [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
EDO Query on EDO | G [auth A] I [auth B] L [auth C] M [auth C] N [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MLY Query on MLY | A | L-PEPTIDE LINKING | C8 H18 N2 O2 | LYS | |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 53.869 | α = 89.94 |
b = 72.645 | β = 90.01 |
c = 93.77 | γ = 90.08 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
HKL-3000 | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | -- |