5EVI

Crystal Structure of Beta-Lactamase/D-Alanine Carboxypeptidase from Pseudomonas syringae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.163 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of Beta-Lactamase/D-Alanine Carboxypeptidase from Pseudomonas syringae

Kim, Y.Hatzos-Skintges, C.Endres, M.Babnigg, G.Joachimiak, A.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-Lactamase/D-Alanine Carboxypeptidase
A
366Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)Gene Names: ampC
EC: 3.5.2.6
Find proteins for Q87Z37 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000))
Go to UniProtKB:  Q87Z37
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-Lactamase/D-Alanine Carboxypeptidase
B
366Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)Gene Names: ampC
EC: 3.5.2.6
Find proteins for Q87Z37 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000))
Go to UniProtKB:  Q87Z37
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Beta-Lactamase/D-Alanine Carboxypeptidase
C
366Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)Gene Names: ampC
EC: 3.5.2.6
Find proteins for Q87Z37 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000))
Go to UniProtKB:  Q87Z37
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Beta-Lactamase/D-Alanine Carboxypeptidase
D
366Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)Gene Names: ampC
EC: 3.5.2.6
Find proteins for Q87Z37 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000))
Go to UniProtKB:  Q87Z37
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B, C, D
ethane-1,2-diol
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
MLY
Query on MLY
A, B, C, D
L-PEPTIDE LINKINGC8 H18 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.163 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 53.869α = 89.94
b = 72.645β = 90.01
c = 93.770γ = 90.08
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000phasing
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
National Institutes of HealthUnited States--

Revision History 

  • Version 1.0: 2016-01-13
    Type: Initial release