5ER3

Crystal structure of ABC transporter system solute-binding protein from Rhodopirellula baltica SH 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.11 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 5ER3

Classification: solute-binding protein

Total Structure Weight: 36810.08

Macromolecule Entities
Molecule Chains Length Organism Details
Sugar ABC transporter, periplasmic sugar-binding protein A 341 Rhodopirellula baltica Gene Name(s): RB10898
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.11 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.176
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 74.75 α = 90.00
b = 95.58 β = 90.00
c = 46.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-11-13
  • Released Date: 2015-11-25
  • Deposition author(s): Chang, C., Duke, N., Endres, M., Mack, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2015-11-25

    Type: Initial release