5ER3

Crystal structure of ABC transporter system solute-binding protein from Rhodopirellula baltica SH 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.105 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of ABC transporter system solute-binding protein from Rhodopirellula baltica SH 1

Chang, C.Duke, N.Endres, M.Mack, J.Joachimiak, A.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Sugar ABC transporter, periplasmic sugar-binding protein
A
341Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1)Mutation(s): 0 
Find proteins for Q7UK26 (Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1))
Go to UniProtKB:  Q7UK26
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.105 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.176 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 74.755α = 90.00
b = 95.576β = 90.00
c = 46.245γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data reduction
SCALEPACKdata scaling
HKL-3000phasing
BUCCANEERphasing
PHENIXrefinement
SBC-Collectdata collection
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-11-25
    Type: Initial release