Crystal Structure of D-alanine Carboxypeptidase AmpC from Mycobacterium smegmatis
Kim, Y., Hatzos-Skintges, C., Endres, M., Babnigg, G., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-lactamase | 357 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 0  Gene Names: MSMEG_3978 EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for A0QZC8 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QZC8  Go to UniProtKB:  A0QZC8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0QZC8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | J [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CL Query on CL | D [auth A] E [auth A] F [auth B] G [auth B] H [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 127.779 | α = 90 |
b = 73.682 | β = 90.19 |
c = 113.413 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-3000 | data scaling |
HKL-3000 | phasing |
SBC-Collect | data collection |
Funding Organization | Location | Grant Number |
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National Institutes of Health | United States | -- |