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 5E2H | pdb_00005e2h

Crystal Structure of D-alanine Carboxypeptidase AmpC from Mycobacterium smegmatis

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd5e2hc1 Multi-domain proteins (alpha and beta) beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like automated matches automated matches (Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ], SCOPe (2.08)
Cd5e2hc2 Artifacts Tags Tags Tags N-terminal Tags (Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ], SCOPe (2.08)
Bd5e2hb1 Multi-domain proteins (alpha and beta) beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like automated matches automated matches (Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ], SCOPe (2.08)
Bd5e2hb2 Artifacts Tags Tags Tags N-terminal Tags (Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ], SCOPe (2.08)
Ad5e2ha1 Multi-domain proteins (alpha and beta) beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like automated matches automated matches (Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ], SCOPe (2.08)
Ad5e2ha2 Artifacts Tags Tags Tags N-terminal Tags (Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B Superfamilybeta-lactamase/transpeptidase-like 8069921 3001604 SCOP2B (2022-06-29)
BSCOP2B Superfamilybeta-lactamase/transpeptidase-like 8069921 3001604 SCOP2B (2022-06-29)
ASCOP2 Familybeta-Lactamase/D-ala carboxypeptidase 8069920 4002685 SCOP2 (2022-06-29)
ASCOP2 Superfamilybeta-lactamase/transpeptidase-like 8069921 3001604 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ce5e2hC1 A: alpha arraysX: beta-propeller-likeH: beta-Prism IIT: beta-Prism IIF:ECOD (v295.2)
Be5e2hB1 A: alpha arraysX: beta-propeller-likeH: beta-Prism IIT: beta-Prism IIF:ECOD (v295.2)
Ae5e2hA1 A: alpha arraysX: beta-propeller-likeH: beta-Prism IIT: beta-Prism IIF:ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C3.40.710.10 Alpha Beta 3-Layer(aba) Sandwich Beta-lactamase DD-peptidase/beta-lactamase superfamilyCATH (4.3.0)
B3.40.710.10 Alpha Beta 3-Layer(aba) Sandwich Beta-lactamase DD-peptidase/beta-lactamase superfamilyCATH (4.3.0)
A3.40.710.10 Alpha Beta 3-Layer(aba) Sandwich Beta-lactamase DD-peptidase/beta-lactamase superfamilyCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00144Beta-lactamase (Beta-lactamase)Beta-lactamaseThis family appears to be distantly related to Pfam:PF00905 and PF00768 D-alanyl-D-alanine carboxypeptidase. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Beta-lactamase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR001466Beta-lactamase-relatedDomain
A, B, C
IPR012338Beta-lactamase/transpeptidase-likeHomologous Superfamily
A, B, C
IPR001586Beta-lactamase, class-C active siteActive Site
A, B, C
IPR058136Beta-lactamase AmpCFamily
A, B, C
IPR050491Beta-lactamase AmpC-likeFamily