5BYK

Schistosoma mansoni (Blood Fluke) Sulfotransferase/S-oxamniquine Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.152

Literature

Macromolecules
Sequence Display for 5BYK

Classification: TRANSFERASE

Total Structure Weight: 30810.07

Macromolecule Entities
Molecule Chains Length Organism Details
Sulfotransferase A 259 Schistosoma mansoni Gene Name(s): Smp_089320
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A3P
Query on A3P

A ADENOSINE-3'-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
WHTCPDAXWFLDIH-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OAQ
Query on OAQ

A {(2S)-7-nitro-2-[(propan-2-ylamino)methyl]- 1,2,3,4-tetrahydroquinolin-6-yl}methanol
Oxamniquine (Synonym)
C14 H21 N3 O3
XCGYUJZMCCFSRP-LBPRGKRZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CAS
Query on CAS
A L-PEPTIDE LINKING C5 H12 As N O2 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.152
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 140.59 α = 90.00
b = 39.43 β = 90.00
c = 54.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-10
  • Released Date: 2015-09-30
  • Deposition author(s): Taylor, A.B., Cao, X., Holloway, S.P., Hart, P.J.

Revision History

  • 2015-11-18
    Type: Database references, Structure summary