5BRU

Catalytic Improvement of an Artificial Metalloenzyme by Computational Design


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.137

Literature

Macromolecules
Sequence Display for 5BRU

Classification: OXIDOREDUCTASE

Total Structure Weight: 30343.08

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonic anhydrase 2 A 260 Homo sapiens EC#: 4.2.1.1 IUBMB
Mutation: L140M, L197M, C205S, N252L
Gene Name(s): CA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8TH
Query on 8TH

A chloro[(phenylsulfonyl){[4-(4-sulfamoylphenyl)pyridin- 2-yl-kappaN]methyl}azanide-kappaN][(1,2,3,4,5- eta)-1,2,3,4-tetramethyl-5-propylcyclopentadienyl]iridium
C30 H35 Cl Ir N3 O4 S2
MQIPAPWTTHRPKT-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SO4 Ki: 89000000 - 300000000 nM (98) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.137
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 42.31 α = 90.00
b = 41.69 β = 104.26
c = 72.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-01
  • Released Date: 2015-06-24
  • Deposition author(s): Heinisch, T., Pellizzoni, M., Duerrenberger, M., Tinberg, C.E., Koehler, V., Klehr, J., Haeussinger, D., Baker, D., Ward, T.R.

Revision History

  • Version 1_0: 2015-06-24

    Type: Initial release

  • Version 1_1: 2015-08-12

    Type: Database references

  • Version 1_2: 2015-08-26

    Type: Database references