4ZU5

Crystal structure of the QdtA 3,4-Ketoisomerase from Thermoanaerobacterium thermosaccharolyticum, apo form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 4ZU5

Classification: ISOMERASE

Total Structure Weight: 35184.56

Macromolecule Entities
Molecule Chains Length Organism Details
QdtA A, B 144 Thermoanaerobacterium thermosaccharolyticum Mutation: A52S, F94L, L95V, C116Y
Gene Name(s): qdtA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PXN
Query on PXN

B (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2- bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan- 2-ol
PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH) (Synonym)
C17 H36 O8
GXEZGLLPFFKHGE-FPCVCCKLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
THM
Query on THM

A, B THYMIDINE
DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE (Synonym)
C10 H14 N2 O5
IQFYYKKMVGJFEH-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.205
  • Space Group: P 4 21 2

Unit Cell:

Length (Å) Angle (°)
a = 93.74 α = 90.00
b = 93.74 β = 90.00
c = 95.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-05-15
  • Released Date: 2016-03-30
  • Deposition author(s): Thoden, J.B., Vinogradov, E., Gilbert, M., Salinger, A.J., Holden, H.M.

Revision History

No revisions since initial release