4LYN

Crystal structure of cyclin-dependent kinase 2 (cdk2-wt) complex with (2s)-n-(5-(((5-tert-butyl-1,3-oxazol-2-yl)methyl)sulfanyl)-1,3-thiazol-2-yl)-2-phenylpropanamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 4LYN

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 34378.04

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1YG
Query on 1YG

A (2S)-N-(5-{[(5-tert-butyl-1,3-oxazol-2-yl)methyl]sulfanyl}- 1,3-thiazol-2-yl)-2-phenylpropanamide
C20 H23 N3 O2 S2
FIZSPBCJAWUURL-ZDUSSCGKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1YG N/A in BindingDB
N/A in BindingMoad
IC50: 60 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.185
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.46 α = 90.00
b = 71.84 β = 90.00
c = 72.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-31
  • Released Date: 2013-10-02
  • Deposition author(s): Sack, J.S.

Revision History

  • Version 1_0: 2013-10-02

    Type: Initial release

  • Version 1_1: 2017-11-15

    Type: Refinement description