4F0S

Crystal structure of an adenosine deaminase homolog from Chromobacterium violaceum (target NYSGRC-019589) with bound inosine.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.156

Literature

Macromolecules
Sequence Display for 4F0S

Classification: HYDROLASE

Total Structure Weight: 49972.62

Macromolecule Entities
Molecule Chains Length Organism Details
5-methylthioadenosine/S-adenosylhomocysteine deaminase A 447 Chromobacterium violaceum EC#: 3.5.4.28 IUBMB 3.5.4.31 IUBMB
Gene Name(s): mtaD CV_1032
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NOS
Query on NOS

A INOSINE
C10 H12 N4 O5
UGQMRVRMYYASKQ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG4
Query on PG4

A TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.156
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 101.05 α = 90.00
b = 101.05 β = 90.00
c = 88.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-04
  • Released Date: 2012-06-06
  • Deposition author(s): Kim, J., Vetting, M.W., Sauder, J.M., Burley, S.K., Raushel, F.M., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

Revision History

  • Version 1_0: 2012-06-06

    Type: Initial release