4ZNM

Crystal structure of SgcC5 protein from Streptomyces globisporus (apo form)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 4ZNM

Classification: LIGASE

Total Structure Weight: 102585.70

Macromolecule Entities
Molecule Chains Length Organism Details
C-domain type II peptide synthetase A, B 462 Streptomyces globisporus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET
CSO
Query on CSO
A, B L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 99.60 α = 90.00
b = 104.54 β = 90.00
c = 108.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-05-04
  • Released Date: 2015-05-27
  • Deposition author(s): Michalska, K., Bigelow, L., Jedrzejczak, R., Babnigg, G., Lohman, J., Ma, M., Rudolf, J., Chang, C.-Y., Shen, B., Joachimiak, A., Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)

Revision History

  • Version 1_0: 2015-05-27

    Type: Initial release

  • Version 1_1: 2016-09-21

    Type: Source and taxonomy

  • Version 1_2: 2017-09-06

    Type: Author supporting evidence, Derived calculations