4ZNM

Crystal structure of SgcC5 protein from Streptomyces globisporus (apo form)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.998 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
C-domain type II peptide synthetase
A, B
462Streptomyces globisporus
Find proteins for Q8GMG2 (Streptomyces globisporus)
Go to UniProtKB:  Q8GMG2
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
CSO
Query on CSO
A, B
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 99.596α = 90.00
b = 104.542β = 90.00
c = 108.465γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data scaling
HKL-3000phasing
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM094585
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM098248

Revision History 

  • Version 1.0: 2015-05-27
    Type: Initial release
  • Version 1.1: 2016-09-21
    Type: Source and taxonomy
  • Version 1.2: 2017-09-06
    Type: Author supporting evidence, Derived calculations
  • Version 1.3: 2017-11-22
    Type: Refinement description