4Q88

Glycosyl hydrolase family 88 from Bacteroides vulgatus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.164
  • R-Value Work: 0.135

Literature

Macromolecules
Sequence Display for 4Q88

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 84742.13

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein A, B 359 Bacteroides vulgatus Fragment: UNP residues 18-373
Gene Name(s): BVU_1783
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 55.42 α = 65.30
b = 73.50 β = 83.66
c = 73.18 γ = 90.94

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-04-25
  • Released Date: 2014-05-21
  • Deposition author(s): Osipiuk, J., Li, H., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2014-05-21

    Type: Initial release

  • Version 1_1: 2017-11-22

    Type: Refinement description