4Q88

Glycosyl hydrolase family 88 from Bacteroides vulgatus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.164 
  • R-Value Work: 0.135 
  • R-Value Observed: 0.137 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Glycosyl hydrolase Family 88 from Bacteroides vulgatus

Osipiuk, J.Li, H.Endres, M.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Uncharacterized proteinAB359Bacteroides vulgatus ATCC 8482Mutation(s): 0 
Gene Names: BVU_1783
Find proteins for A6L195 (Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / NBRC 14291 / NCTC 11154))
Explore A6L195 
Go to UniProtKB:  A6L195
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download CCD File 
B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download CCD File 
A, B
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A,BL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.164 
  • R-Value Work: 0.135 
  • R-Value Observed: 0.137 
  • Space Group: P 1
  • Diffraction Data DOI: 10.18430/M34Q88 Protein Diffraction
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.415α = 65.3
b = 73.502β = 83.66
c = 73.183γ = 90.94
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
SHELXCDphasing
SHELXDphasing
MLPHAREphasing
DMphasing
ARP/wARPmodel building
HKL-3000phasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-05-21
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Refinement description