4MNR

Crystal Structure of D,D-Transpeptidase Domain of Peptidoglycan Glycosyltransferase from Eggerthella lenta


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 4MNR

Classification: TRANSFERASE

Total Structure Weight: 48148.46

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidoglycan glycosyltransferase A 457 Eggerthella lenta EC#: 2.4.1.129 IUBMB
Fragment: D,D-Transpeptidase domain (UNP residues 471-924)
Gene Name(s): Elen_3042
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACY
Query on ACY

A ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.164
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 48.06 α = 90.00
b = 69.16 β = 90.00
c = 119.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-11
  • Released Date: 2013-09-25
  • Deposition author(s): Kim, Y., Wu, R., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2013-09-25

    Type: Initial release