4IAG

Crystal structure of ZbmA, the zorbamycin binding protein from Streptomyces flavoviridis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 4IAG

Classification: Zorbamycin Binding Protein

Total Structure Weight: 15604.01

Macromolecule Entities
Molecule Chains Length Organism Details
Zbm binding protein A 135 Streptomyces flavoviridis Gene Name(s): zbmA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET
ILY
Query on ILY
A NON-POLYMER C9 H20 N2 O2 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.189
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 38.79 α = 90.00
b = 38.79 β = 90.00
c = 268.52 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-06
  • Released Date: 2013-02-20
  • Deposition author(s): Cuff, M.E., Bigelow, L., Bruno, C.J.P., Clancy, S., Babnigg, G., Bingman, C.A., Yennamalli, R., Lohman, J., Ma, M., Shen, B., Phillips Jr., G.N., Joachimiak, A., Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)

Revision History

  • Version 1_0: 2013-02-20

    Type: Initial release

  • Version 1_1: 2013-12-25

    Type: Structure summary

  • Version 1_2: 2015-11-11

    Type: Database references

  • Version 1_3: 2015-12-02

    Type: Database references

  • Version 1_4: 2017-11-15

    Type: Refinement description