3VBY

Exploitation of hydrogen bonding constraints and flat hydrophobic energy landscapes in Pim-1 kinase needle screening and inhibitor design


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 3VBY

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 34830.48

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 299 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: unp residues 120-404
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0FR
Query on 0FR

A furan-2-yl(1H-indol-3-yl)methanone
C13 H9 N O2
ZGNXEAXRPSISJF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMD
Query on IMD

A IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0FR IC50: 28000 nM (100) BindingDB

IC50: 28000 nM  BindingMOAD
IC50: 28000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.211
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.00 α = 90.00
b = 97.00 β = 90.00
c = 81.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-02
  • Released Date: 2012-03-21
  • Deposition author(s): Liu, J.

Revision History

  • 2012-05-16
    Type: Database references