3LFN

Crystal structure of CDK2 with SAR57, an aminoindazole type inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 3LFN

Classification: TRANSFERASE

Total Structure Weight: 34347.92

Macromolecule Entities
Molecule Chains Length Organism Details
Cell division protein kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A27
Query on A27

A N-[6-(4-hydroxyphenyl)-5-phenyl-1H-indazol- 3-yl]butanamide
C23 H21 N3 O2
KYYOHACAJWYNOT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
A27 N/A in BindingDB
Ki: 3160 nM  BindingMOAD
IC50: 3160 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.184
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.34 α = 90.00
b = 72.07 β = 90.00
c = 71.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-01-18
  • Released Date: 2010-03-02
  • Deposition author(s): Dreyer, M.K., Wendt, K.U., Schimanski-Breves, S., Loenze, P.

Revision History

  • Version 1_0: 2010-03-02

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance