3FPU

The crystallographic structure of the Complex between Evasin-1 and CCL3

• PDB DOI: https://doi.org/10.2210/pdb3FPU/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Rhipicephalus sanguineus, Homo sapiens
• Expression System: Spodoptera frugiperda, Escherichia coli
• Mutation(s): Yes 


• Deposited: 2009-01-06 Released: 2010-01-12 
• Deposition Author(s): Shaw, J.P., Dias, J.M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.76 Å
• R-Value Free: 0.285 
• R-Value Work: 0.231 
• R-Value Observed: 0.234 

Literature

Structural basis of chemokine sequestration by a tick chemokine binding protein: the crystal structure of the complex between Evasin-1 and CCL3

Dias, J.M., Losberger, C., Deruaz, M., Power, C.A., Proudfoot, A.E.I., Shaw, J.P.

(2009) PLoS One 4

• PubMed: 20041127 
• DOI: https://doi.org/10.1371/journal.pone.0008514
• Primary Citation of Related Structures:  
  3FPR, 3FPT, 3FPU


• PubMed Abstract: 
  

  Chemokines are a subset of cytokines responsible for controlling the cellular migration of inflammatory cells through interaction with seven transmembrane G protein-coupled receptors. The blocking of a chemokine-receptor interaction results in a reduced inflammatory response, and represents a possible anti-inflammatory strategy, a strategy that is already employed by some virus and parasites. Anti-chemokine activity has been described in the extracts of tick salivary glands, and we have recently described the cloning and characterization of such chemokine binding proteins from the salivary glands, which we have named Evasins.

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Organizational Affiliation: 

Merck Serono Geneva Research Center, Merck Serono S.A., Geneva, Switzerland.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 19.31 kDa 
• Atom Count: 1,470 
• Modelled Residue Count: 166 
• Deposited Residue Count: 170 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Evasin-1	A	100	Rhipicephalus sanguineus	Mutation(s): 0
UniProt
Find proteins for P0C8E7 (Rhipicephalus sanguineus) Explore P0C8E7  Go to UniProtKB:  P0C8E7

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
C-C motif chemokine 3	B	70	Homo sapiens	Mutation(s): 1
UniProt & NIH Common Fund Data Resources
Find proteins for P10147 (Homo sapiens) Explore P10147  Go to UniProtKB:  P10147
PHAROS:  P10147 GTEx:  ENSG00000277632

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NI	C [auth A], D [auth A]	NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.76 Å
• R-Value Free: 0.285 
• R-Value Work: 0.231 
• R-Value Observed: 0.234 
• Space Group: P 4₃ 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 104.384	α = 90
b = 104.384	β = 90
c = 104.384	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
AMoRE	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-01-12 
Deposition Author(s): Shaw, J.P., Dias, J.M.

Revision History  

• Version 1.0: 2010-01-12
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2013-10-16
  Changes: Derived calculations
• Version 1.3: 2021-11-10
  Changes: Database references, Derived calculations
• Version 1.4: 2023-11-01
  Changes: Data collection, Refinement description