3F2A

Crystal structure of human Pim-1 in complex with DAPPA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.256

Literature

Macromolecules
Sequence Display for 3F2A

Classification: TRANSFERASE

Total Structure Weight: 34694.59

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase Pim-1 A 300 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 105-404
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
985
Query on 985

A (2E)-3-{3-[6-(4-methyl-1,4-diazepan-1-yl)pyrazin- 2-yl]phenyl}prop-2-enoic acid
C19 H22 N4 O2
DTBFDAJNODVUMF-VOTSOKGWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
985 IC50: 57 nM (100) BindingDB

IC50: 57 nM  BindingMOAD
IC50: 57 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.256
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 96.06 α = 90.00
b = 96.06 β = 90.00
c = 80.53 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-29
  • Released Date: 2009-03-10
  • Deposition author(s): Qian, K.

Revision History

  • 2011-07-13
    Type: Version format compliance