3VBI

Crystal Structure of AntD, an N-acyltransferase from Bacillus cereus in complex with dTDP-4-amino-4,6-dideoxyglucose and Coenzyme A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 3VBI

Classification: TRANSFERASE

Total Structure Weight: 72420.02

Macromolecule Entities
Molecule Chains Length Organism Details
Galactoside O-acetyltransferase A, C, E 205 Bacillus cereus EC#: 2.3.1.18 IUBMB
Gene Name(s): BCSJ1_02085
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
COA
Query on COA

A, C, E COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
0FX
Query on 0FX

A, C, E dTDP-4-amino-4,6-dideoxyglucose
C16 H27 N3 O14 P2
UIVJXHWSIFBBCY-LPGAPTBISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BCT
Query on BCT

A, C, E BICARBONATE ION
C H O3
BVKZGUZCCUSVTD-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

E CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.198
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 71.11 α = 90.00
b = 71.11 β = 90.00
c = 138.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-02
  • Released Date: 2012-01-25
  • Deposition author(s): Kubiak, R.L., Holden, H.M.

Revision History

  • Version 1_0: 2012-01-25

    Type: Initial release

  • Version 1_1: 2012-02-22

    Type: Database references