3NTE

Crystal Structure of the Wild-type Full-Length HIV-1 Capsid Protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 3NTE

Classification: VIRAL PROTEIN

Total Structure Weight: 53486.67

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 capsid protein A, B 221 Human immunodeficiency virus 1 Fragment: UNP residues 133-353
Gene Name(s): gag
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
I3M
Query on I3M

A, B Tri-iodode Anion
I3
WRTMQOHKMFDUKX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IOD
Query on IOD

A, B IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A, B FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.204
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 47.91 α = 90.00
b = 86.53 β = 99.73
c = 55.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-03
  • Released Date: 2010-12-01
  • Deposition author(s): Betts, L., Yeh, J.I.

Revision History

  • Version 1_0: 2010-12-01

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2014-07-02

    Type: Database references

  • Version 1_3: 2017-11-08

    Type: Advisory, Refinement description