photo-activation state of Fe-type NHase in anaerobic condition
Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Nitrile hydratase subunit alpha | 206 | Rhodococcus erythropolis | Mutation(s): 2  EC: 4.2.1.84 | ||
UniProt | |||||
Find proteins for P13448 (Rhodococcus erythropolis) Explore P13448  Go to UniProtKB:  P13448 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P13448 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Nitrile hydratase subunit beta | 212 | Rhodococcus erythropolis | Mutation(s): 0  EC: 4.2.1.84 | ||
UniProt | |||||
Find proteins for P13449 (Rhodococcus erythropolis) Explore P13449  Go to UniProtKB:  P13449 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P13449 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FE Query on FE | C [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N | |||
MG Query on MG | D [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S | CYS | |
CSO Query on CSO | A | L-PEPTIDE LINKING | C3 H7 N O3 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 115.052 | α = 90 |
b = 60.587 | β = 124.96 |
c = 82.007 | γ = 90 |
Software Name | Purpose |
---|---|
SHELX | model building |
SHELXL-97 | refinement |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
CNS | phasing |