2WME

Crystallographic structure of betaine aldehyde dehydrogenase from Pseudomonas aeruginosa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 2WME

Classification: OXIDOREDUCTASE

Total Structure Weight: 436051.53

Macromolecule Entities
Molecule Chains Length Organism Details
BETAINE ALDEHYDE DEHYDROGENASE A, B, D..., F, G, HA, B, D, F, G, H 490 Pseudomonas aeruginosa EC#: 1.2.1.8 IUBMB
Gene Name(s): betB PA5373
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BETAINE ALDEHYDE DEHYDROGENASE C, E 490 Pseudomonas aeruginosa EC#: 1.2.1.8 IUBMB
Gene Name(s): betB PA5373

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B, C, D, E, F, G, H NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, D, E, F, G, H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A, B, D, F, G BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B, C, D, E, F, G, H POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
C, E L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.166
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 334.95 α = 90.00
b = 133.01 β = 94.94
c = 101.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-30
  • Released Date: 2009-08-04
  • Deposition author(s): Gonzalez-Segura, L., Rudino-Pinera, E., Munoz-Clares, R.A., Horjales, E.
  • This entry supercedes: 2VE5

Revision History

  • Version 1_0: 2009-08-04

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance