1S7H

Structural Genomics, 2.2A crystal structure of protein YKOF from Bacillus subtilis

• PDB DOI: https://doi.org/10.2210/pdb1S7H/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2004-01-29 Released: 2004-07-06 
• Deposition Author(s): Zhang, R., Lezondra, L., Moy, S., Dementieva, I., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.281 
• R-Value Work: 0.221 
• R-Value Observed: 0.221 

Literature

2.2A crystal structure of protein YKOF from Bacillus subtilis

Zhang, R., Lezondra, L., Moy, S., Dementieva, I., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 88.21 kDa 
• Atom Count: 6,015 
• Modelled Residue Count: 732 
• Deposited Residue Count: 800 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ykoF	A, B, C, D	200	Bacillus subtilis	Mutation(s): 0  Gene Names: YKOF
UniProt
Find proteins for O34911 (Bacillus subtilis (strain 168)) Explore O34911  Go to UniProtKB:  O34911

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.281 
• R-Value Work: 0.221 
• R-Value Observed: 0.221 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 169.74	α = 90
b = 55.078	β = 90
c = 85.493	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
SBC-Collect	data collection
HKL-2000	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-07-06 
Deposition Author(s): Zhang, R., Lezondra, L., Moy, S., Dementieva, I., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2004-07-06
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-02-14
  Changes: Data collection, Database references