1S7H | pdb_00001s7h

Structural Genomics, 2.2A crystal structure of protein YKOF from Bacillus subtilis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1s7hd_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH1187/YkoF-like	Putative thiamin/HMP-binding protein YkoF	Putative thiamin/HMP-binding protein YkoF	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d1s7hc_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH1187/YkoF-like	Putative thiamin/HMP-binding protein YkoF	Putative thiamin/HMP-binding protein YkoF	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d1s7hb_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH1187/YkoF-like	Putative thiamin/HMP-binding protein YkoF	Putative thiamin/HMP-binding protein YkoF	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
A	d1s7ha_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH1187/YkoF-like	Putative thiamin/HMP-binding protein YkoF	Putative thiamin/HMP-binding protein YkoF	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	MTH1187/YkoF-like	8042317	3000874	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MTH1187/YkoF-like	8042317	3000874	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MTH1187/YkoF-like	8042317	3000874	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	MTH1187/YkoF-like	8042317	3000874	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ykof	e1s7hD1	A: a+b two layers	X: Alpha-beta plaits	H: MTH1187/YkoF-like (From Topology)	T: MTH1187/YkoF-like	F: Ykof	ECOD (1.6)
C	Ykof	e1s7hC1	A: a+b two layers	X: Alpha-beta plaits	H: MTH1187/YkoF-like (From Topology)	T: MTH1187/YkoF-like	F: Ykof	ECOD (1.6)
B	Ykof	e1s7hB1	A: a+b two layers	X: Alpha-beta plaits	H: MTH1187/YkoF-like (From Topology)	T: MTH1187/YkoF-like	F: Ykof	ECOD (1.6)
A	Ykof	e1s7hA1	A: a+b two layers	X: Alpha-beta plaits	H: MTH1187/YkoF-like (From Topology)	T: MTH1187/YkoF-like	F: Ykof	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.70.930	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
C	3.30.70.930	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
B	3.30.70.930	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
A	3.30.70.930	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF07615	YKOF-related Family (Ykof)	YKOF-related Family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	ykoF	cation binding vitamin binding thiamine binding binding ion binding alcohol binding heterocyclic compound binding small molecule binding sulfur compound binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR029756	MTH1187/YkoF-like	Homologous Superfamily
A, B, C, D	IPR011522	Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative	Domain
A, B, C, D	IPR015835	Hydroxymethyl pyrimidine (HMP)/thiamine binding protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.