9OQ7 | pdb_00009oq7

Chlamydia muridarum Major Outer Membrane Protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.96 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9OQ7

This is version 1.1 of the entry. See complete history

Literature

The distinct trimeric structure of the immunodominant chlamydial antigen Major Outer Membrane Protein.

Guo, Y.Shelby, M.L.D'haeseleer, P.Pal, S.Slepenkin, A.Robinson, B.V.Otwinowski, Z.Segelke, B.W.Coleman, M.A.Borek, D.de la Maza, L.M.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-72763-4
  • Primary Citation Related Structures: 
    9OQ7, 9OQD

  • PubMed Abstract: 

    The chlamydial Major Outer Membrane Protein (MOMP) is a promising subunit vaccine candidate due to its abundance in the outer membrane (OM), the presence of four surface-exposed variable domains (VDs) containing neutralizing and serotyping epitopes, and confirmed T-cell epitopes located in its constant domains (CDs). However, recombinant and denatured forms of MOMP have failed to elicit immune responses comparable to native preparations, indicating that conformation is critical for immunogenicity. Here, we present two cryo-EM structures of native Chlamydia muridarum MOMP, isolated from infectious elementary bodies (EBs). EB MOMP forms a distinct trimer with a stem of three narrow, non-permeable β-barrels and an extracellular, folded antigenic cap that displays VDs. In complex with a neutralizing Fab fragment of a conformational antibody, the cap undergoes structural reorganization that shows how epitope presentation is modulated by immune engagement. These structures reveal the molecular basis of MOMP's serovar specificity and provide a template for structure-based vaccine design.


  • Organizational Affiliation
    • Department of Biophysics, UT Southwestern Medical Center, Dallas, TX, USA.

Macromolecule Content 

  • Total Structure Weight: 125.32 kDa 
  • Atom Count: 9,006 
  • Modeled Residue Count: 1,095 
  • Deposited Residue Count: 1,095 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Major outer membrane porinA,
B,
C [auth G]
365Chlamydia muridarumMutation(s): 0 
UniProt
Find proteins for P75024 (Chlamydia muridarum (strain MoPn / Nigg))
Explore P75024 
Go to UniProtKB:  P75024
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75024
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
FO4

Query on FO4



Download:Ideal Coordinates CCD File
H [auth A],
N [auth B],
Q [auth G]
sphingomyelin
C47 H94 N2 O6 P
NHYQHBPEJLFFSO-QYKFWSDSSA-O
PEX

Query on PEX



Download:Ideal Coordinates CCD File
D [auth A],
J [auth B],
R [auth G]
1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
C25 H49 N O8 P
KKOSJVWUOHEQKA-HSZRJFAPSA-M
NAG

Query on NAG



Download:Ideal Coordinates CCD File
F [auth A],
L [auth B],
T [auth G]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
DAO

Query on DAO



Download:Ideal Coordinates CCD File
E [auth A]
G [auth A]
K [auth B]
M [auth B]
P [auth G]
E [auth A],
G [auth A],
K [auth B],
M [auth B],
P [auth G],
S [auth G]
LAURIC ACID
C12 H24 O2
POULHZVOKOAJMA-UHFFFAOYSA-N
MG

Query on MG



Download:Ideal Coordinates CCD File
I [auth A],
O [auth B],
U [auth G]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.96 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2026-05-27
    Type: Initial release
  • Version 1.1: 2026-09-09
    Changes: Data collection, Database references