9LXP | pdb_00009lxp

A Cryo-EM structure of LA-PTH-PTH1R-Beta-arrestin1 complex (state 2 conformation)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Structural basis of PTH1R-beta-arrestin core engagement reveals design principles for G-protein-biased therapeutics.

Zhao, L.H.He, Q.Yuan, Q.Zhang, M.Zhao, G.G.Sun, J.Hu, W.Shan, H.Xu, H.E.

(2026) Nat Struct Mol Biol 33: 868-881

  • DOI: https://doi.org/10.1038/s41594-026-01806-7
  • Primary Citation Related Structures: 
    8YFO, 8YG4, 9LXP, 9LXR, 9LY2, 9LY3

  • PubMed Abstract: 

    G-protein-coupled receptors (GPCRs) transmit cellular signals through both G protein and arrestin pathways and biased signaling offers potential therapeutic advantages through selective activation. Although GPCR-G protein complexes are well characterized, structural understanding of class B GPCR-arrestin interactions remains limited. Here we show the cryo-electron microscopy structure of parathyroid hormone receptor 1 in core engagement with β-arrestin 1, revealing the molecular basis of arrestin coupling. The structure shows a rearrangement in which inward movement of extracellular transmembrane helix 5 (TM5) and extracellular loop 3 (ECL3) drives outward displacement of cytoplasmic TM5, forming a configuration required for arrestin binding. Guided by comparison with the G s -coupled state, we designed peptide analogs that prevent these TM5/ECL3 conformational changes, producing G-protein-biased agonists that preserve agonist efficacy while reducing arrestin recruitment. In an ovariectomized mouse model, a lead compound shows comparable therapeutic efficacy, providing a framework for structure-guided design of biased therapeutics targeting class B GPCRs.


  • Organizational Affiliation
    • Research Center for Medicinal Structural Biology, National Research Center for Translational Medicine at Shanghai, State Key Laboratory of Medical Genomics, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. zlh13131@rjh.com.cn.

Macromolecule Content 

  • Total Structure Weight: 149.77 kDa 
  • Atom Count: 8,509 
  • Modeled Residue Count: 1,099 
  • Deposited Residue Count: 1,337 
  • Unique protein chains: 5

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Beta-arrestin-1A [auth B]374Homo sapiensMutation(s): 0 
Gene Names: ARRB1ARR1
UniProt & NIH Common Fund Data Resources
Find proteins for P49407 (Homo sapiens)
Explore P49407 
Go to UniProtKB:  P49407
PHAROS:  P49407
GTEx:  ENSG00000137486 
Entity Groups
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UniProt GroupP49407
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Fab30HB [auth C]230synthetic constructMutation(s): 0 
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Fab30LC [auth E]215synthetic constructMutation(s): 0 
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
LA-PTHD [auth L]36synthetic constructMutation(s): 0 
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Parathyroid hormone/parathyroid hormone-related peptide receptorE [auth R]482Homo sapiensMutation(s): 0 
Gene Names: PTH1RPTHRPTHR1
UniProt & NIH Common Fund Data Resources
Find proteins for Q03431 (Homo sapiens)
Explore Q03431 
Go to UniProtKB:  Q03431
PHAROS:  Q03431
GTEx:  ENSG00000160801 
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UniProt GroupQ03431
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Reference Sequence

Small Molecules

Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
SEP
Query on SEP
E [auth R]L-PEPTIDE LINKINGC3 H8 N O6 PSER
TPO
Query on TPO
E [auth R]L-PEPTIDE LINKINGC4 H10 N O6 PTHR

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2026-03-04
    Type: Initial release
  • Version 1.1: 2026-03-25
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2026-09-02
    Changes: Data collection, Database references, Source and taxonomy, Structure summary
  • Version 1.3: 2026-09-09
    Changes: Data collection, Source and taxonomy