8YG4 | pdb_00008yg4

A cryo-EM structure of LA-PTH-R1-PTH1R-Gs complex structure


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.59 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8YG4

This is version 1.1 of the entry. See complete history

Literature

Structural basis of PTH1R-beta-arrestin core engagement reveals design principles for G-protein-biased therapeutics.

Zhao, L.H.He, Q.Yuan, Q.Zhang, M.Zhao, G.G.Sun, J.Hu, W.Shan, H.Xu, H.E.

(2026) Nat Struct Mol Biol 33: 868-881

  • DOI: https://doi.org/10.1038/s41594-026-01806-7
  • Primary Citation Related Structures: 
    8YFO, 8YG4, 9LXP, 9LXR, 9LY2, 9LY3

  • PubMed Abstract: 

    G-protein-coupled receptors (GPCRs) transmit cellular signals through both G protein and arrestin pathways and biased signaling offers potential therapeutic advantages through selective activation. Although GPCR-G protein complexes are well characterized, structural understanding of class B GPCR-arrestin interactions remains limited. Here we show the cryo-electron microscopy structure of parathyroid hormone receptor 1 in core engagement with β-arrestin 1, revealing the molecular basis of arrestin coupling. The structure shows a rearrangement in which inward movement of extracellular transmembrane helix 5 (TM5) and extracellular loop 3 (ECL3) drives outward displacement of cytoplasmic TM5, forming a configuration required for arrestin binding. Guided by comparison with the G s -coupled state, we designed peptide analogs that prevent these TM5/ECL3 conformational changes, producing G-protein-biased agonists that preserve agonist efficacy while reducing arrestin recruitment. In an ovariectomized mouse model, a lead compound shows comparable therapeutic efficacy, providing a framework for structure-guided design of biased therapeutics targeting class B GPCRs.


  • Organizational Affiliation
    • Research Center for Medicinal Structural Biology, National Research Center for Translational Medicine at Shanghai, State Key Laboratory of Medical Genomics, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. zlh13131@rjh.com.cn.

Macromolecule Content 

  • Total Structure Weight: 162.02 kDa 
  • Atom Count: 8,620 
  • Modeled Residue Count: 1,081 
  • Deposited Residue Count: 1,434 
  • Unique protein chains: 6

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha-1361Bos taurusMutation(s): 0 
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1354Rattus norvegicusMutation(s): 0 
Gene Names: Gnb1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
Explore P62873 
Go to UniProtKB:  P62873
PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]71Bos taurusMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens)
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Go to UniProtKB:  P59768
PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
NB35D [auth N]140Lama glamaMutation(s): 0 
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
LA-PTH-R1E [auth P]32synthetic constructMutation(s): 0 
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Parathyroid hormone/parathyroid hormone-related peptide receptorF [auth R]476Homo sapiensMutation(s): 0 
Gene Names: PTH1RPTHRPTHR1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q03431 (Homo sapiens)
Explore Q03431 
Go to UniProtKB:  Q03431
PHAROS:  Q03431
GTEx:  ENSG00000160801 
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UniProt GroupQ03431
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.59 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-03
    Type: Initial release
  • Version 1.1: 2026-09-02
    Changes: Data collection, Database references, Source and taxonomy, Structure summary