7OXF

Solution structure of bee apamin


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Apamin structure and pharmacology revisited.

Kuzmenkov, A.I.Peigneur, S.Nasburg, J.A.Mineev, K.S.Nikolaev, M.V.Pinheiro-Junior, E.L.Arseniev, A.S.Wulff, H.Tytgat, J.Vassilevski, A.A.

(2022) Front Pharmacol 13: 977440-977440

  • DOI: https://doi.org/10.3389/fphar.2022.977440
  • Primary Citation of Related Structures:  
    7OXF

  • PubMed Abstract: 

    Apamin is often cited as one of the few substances selectively acting on small-conductance Ca 2+ -activated potassium channels (K Ca 2). However, published pharmacological and structural data remain controversial. Here, we investigated the molecular pharmacology of apamin by two-electrode voltage-clamp in Xenopus laevis oocytes and patch-clamp in HEK293, COS7, and CHO cells expressing the studied ion channels, as well as in isolated rat brain neurons. The microtitre broth dilution method was used for antimicrobial activity screening. The spatial structure of apamin in aqueous solution was determined by NMR spectroscopy. We tested apamin against 42 ion channels (K Ca , K V , Na V , nAChR, ASIC, and others) and confirmed its unique selectivity to K Ca 2 channels. No antimicrobial activity was detected for apamin against Gram-positive or Gram-negative bacteria. The NMR solution structure of apamin was deposited in the Protein Data Bank. The results presented here demonstrate that apamin is a selective nanomolar or even subnanomolar-affinity K Ca 2 inhibitor with no significant effects on other molecular targets. The spatial structure as well as ample functional data provided here support the use of apamin as a K Ca 2-selective pharmacological tool and as a template for drug design.


  • Organizational Affiliation

    Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Apamin19Apis melliferaMutation(s): 1 
UniProt
Find proteins for P01500 (Apis mellifera)
Explore P01500 
Go to UniProtKB:  P01500
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01500
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Science FoundationRussian Federation20-44-01015

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-13
    Type: Initial release
  • Version 1.1: 2022-12-07
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Other