6YP5

Solution NMR structure of the oligomerization domain of respiratory syncytial virus phosphoprotein


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

A Structural and Dynamic Analysis of the Partially Disordered Polymerase-Binding Domain in RSV Phosphoprotein.

Cardone, C.Caseau, C.M.Bardiaux, B.Thureaux, A.Galloux, M.Bajorek, M.Eleouet, J.F.Litaudon, M.Bontems, F.Sizun, C.

(2021) Biomolecules 11

  • DOI: https://doi.org/10.3390/biom11081225
  • Primary Citation of Related Structures:  
    6YP5

  • PubMed Abstract: 

    The phosphoprotein P of Mononegavirales ( MNV ) is an essential co-factor of the viral RNA polymerase L. Its prime function is to recruit L to the ribonucleocapsid composed of the viral genome encapsidated by the nucleoprotein N. MNV phosphoproteins often contain a high degree of disorder. In Pneumoviridae phosphoproteins, the only domain with well-defined structure is a small oligomerization domain (P OD ). We previously characterized the differential disorder in respiratory syncytial virus (RSV) phosphoprotein by NMR. We showed that outside of RSV P OD , the intrinsically disordered N-and C-terminal regions displayed a structural and dynamic diversity ranging from random coil to high helical propensity. Here we provide additional insight into the dynamic behavior of P , a domain that is C-terminal to P OD and constitutes the RSV L-binding region together with P OD . By using small phosphoprotein fragments centered on or adjacent to P OD , we obtained a structural picture of the P OD -P region in solution, at the single residue level by NMR and at lower resolution by complementary biophysical methods. We probed P OD -P inter-domain contacts and showed that small molecules were able to modify the dynamics of P . These structural properties are fundamental to the peculiar binding mode of RSV phosphoprotein to L, where each of the four protomers binds to L in a different way.


  • Organizational Affiliation

    Institut de Chimie des Substances Naturelles, CNRS, Université Paris Saclay, 91190 Gif-sur-Yvette, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Phosphoprotein
A, B, C, D
45Respiratory syncytial virusMutation(s): 0 
UniProt
Find proteins for P03421 (Human respiratory syncytial virus A (strain A2))
Explore P03421 
Go to UniProtKB:  P03421
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP03421
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-04-28
    Type: Initial release
  • Version 1.1: 2021-11-17
    Changes: Data collection, Database references
  • Version 1.2: 2021-11-24
    Changes: Data collection, Database references
  • Version 1.3: 2023-06-14
    Changes: Other