6CUC

Solution structure of double knot toxin (DkTx)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural Basis of the Bivalency of the TRPV1 Agonist DkTx.

Ramanujam, V.Crawford, T.Cristofori-Armstrong, B.Deuis, J.R.Jia, X.Maxwell, M.J.Jami, S.Ma, L.Vetter, I.Mobli, M.

(2024) Angew Chem Int Ed Engl 63: e202314621-e202314621

  • DOI: https://doi.org/10.1002/anie.202314621
  • Primary Citation of Related Structures:  
    6CUC

  • PubMed Abstract: 

    Bivalency is a prevalent natural mechanism to enhance receptor avidity. Various two-domain disulfide-rich peptides exhibiting bivalent action have been identified from animal venoms. A unique characteristic of these peptides is that they induce a pharmacological response different from that provoked by any of the constituent domains. The enhanced potency and avidity of such peptides is therefore a consequence of their domain fusion by a peptide linker. The role of the linker itself, beyond conjugation, remains unclear. Here, we investigate how the linker affects the bivalency of the capsaicin receptor (TRPV1) agonist DkTx. We recombinantly produced isotope labelled DkTx using a protein splicing approach, to solve the high-resolution solution structure of DkTx, revealing residual linker order stabilised by linker-domain interactions leading to biased domain orientations. The significance of this was studied using a combination of mutagenesis, spin relaxation studies and electrophysiology measurements. Our results reveal that disrupting the pre-organisation of the domains of DkTx is accompanied by reductions in potency and onset of avidity. Our findings support a model of pre-configured two-domain binding, in favour of the previously suggested sequential binding model. This highlights the significance of ordered elements in linker design and the natural evolution of these in bivalent toxins.


  • Organizational Affiliation

    Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St Lucia, 4072, Queensland, Australia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tau-theraphotoxin-Hs1a82Cyriopagopus schmidtiMutation(s): 0 
UniProt
Find proteins for P0CH43 (Cyriopagopus schmidti)
Explore P0CH43 
Go to UniProtKB:  P0CH43
Entity Groups  
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UniProt GroupP0CH43
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-03-27
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Data collection, Database references, Derived calculations, Other
  • Version 1.2: 2024-04-24
    Changes: Data collection, Database references