5LOR

human NUDT22

• PDB DOI: https://doi.org/10.2210/pdb5LOR/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2016-08-09 Released: 2017-08-16 
• Deposition Author(s): Carter, M., Stenmark, P.
• Funding Organization(s): Swedish Research Council, Wenner-Gren Foundation, Swedish Cancer Society

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.19 Å
• R-Value Free: 0.244 
• R-Value Work: 0.200 
• R-Value Observed: 0.203 

Literature

Structural and functional studies of human NUDT22

Carter, M., Ann-Sofie, J., Patrick, H., Puigvert, J.C., Carranza, M.M., Vallin, K.S.A., Helleday, T., Stenmark, P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 71.62 kDa 
• Atom Count: 4,571 
• Modelled Residue Count: 581 
• Deposited Residue Count: 660 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoside diphosphate-linked moiety X motif 22	A, B	330	Homo sapiens	Mutation(s): 0  Gene Names: NUDT22, PP11246
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BRQ3 (Homo sapiens) Explore Q9BRQ3  Go to UniProtKB:  Q9BRQ3
PHAROS:  Q9BRQ3 GTEx:  ENSG00000149761

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UPG	C [auth A]	URIDINE-5'-DIPHOSPHATE-GLUCOSE C15 H24 N2 O17 P2 HSCJRCZFDFQWRP-JZMIEXBBSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.19 Å
• R-Value Free: 0.244 
• R-Value Work: 0.200 
• R-Value Observed: 0.203 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.332	α = 90
b = 46.565	β = 94.27
c = 120.678	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-08-16 
Deposition Author(s): Carter, M., Stenmark, P.

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Funding Organization	Location	Grant Number
Swedish Research Council	Sweden	--
Wenner-Gren Foundation	Sweden	--
Swedish Cancer Society	Sweden	--

Revision History  

• Version 1.0: 2017-08-16
  Type: Initial release
  
• Version 1.1: 2024-05-01
  Changes: Data collection, Database references, Refinement description