Macromolecule Content

Total Structure Weight: 71.62 kDa
Atom Count: 4571
Residue Count: 581
Unique protein chains: 1

5LOR

human NUDT22

DOI: 10.2210/pdb5LOR/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2016-08-09 Released: 2017-08-16
Deposition Author(s): Carter, M., Stenmark, P.
Funding Organization(s): Swedish Research Council, Wenner-Gren Foundation, Swedish Cancer Society

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.19 Å
R-Value Free: 0.244
R-Value Work: 0.200
R-Value Observed: 0.203

wwPDB Validation 3D Report Full Report

Literature

Structural and functional studies of human NUDT22

Carter, M., Ann-Sofie, J., Patrick, H., Puigvert, J.C., Carranza, M.M., Vallin, K.S.A., Helleday, T., Stenmark, P.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoside diphosphate-linked moiety X motif 22	A, B	330	Homo sapiens	Mutation(s): 0 Gene Names: NUDT22, PP11246 EC: 3.6.1.45
Find proteins for Q9BRQ3 (Homo sapiens) Explore Q9BRQ3 Go to UniProtKB: Q9BRQ3
NIH Common Fund Data Resources
GTEx: ENSG00000149761
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
UPG Query on UPG Download Ideal Coordinates CCD File SDF format, chain C [A] MOL2 format, chain C [A]	A	URIDINE-5'-DIPHOSPHATE-GLUCOSE C₁₅ H₂₄ N₂ O₁₇ P₂ HSCJRCZFDFQWRP-JZMIEXBBSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.19 Å
R-Value Free: 0.244
R-Value Work: 0.200
R-Value Observed: 0.203
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.332	α = 90
b = 46.565	β = 94.27
c = 120.678	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Deposited Date: 2016-08-09
Released Date: 2017-08-16

Deposition Author(s):

Funding Organization	Location	Grant Number
Swedish Research Council	Sweden	--
Wenner-Gren Foundation	Sweden	--
Swedish Cancer Society	Sweden	--

Revision History

Version 1.0: 2017-08-16
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.